Higher Group ProbesClass Level ProbesClade Level ProbesGenus Level ProbesSpecies Level ProbesPHAEO01 Phaeocystis 76NCHLO01 Non-Chlorophyta 76EHUXL B+4 Emiliania huxleyi 76CRYPT03 Cryptophyta Clade III 76AOST28S A+5 Alexandrium ostenfeldii 76CLADE1 Chrysochromulina & Prymnesium Clade I 75CLADE2 Chrysochromulina Clade II 75SCOST A Skeletonema costatum 74BOLI03 Bolidophyceae Clade I & III (Pacific strains) 74DINO E-12 Dinophyceae (incl. Apicomplexa) 73PMINI04 Prorocentrum minimum 72PMICA02 Prorocentrum micans 72PLIMA01 Prorocentrum lima 72PLIMA02 Prorocentrum lima 72PLIMA03 Prorocentrum lima 72PELA01 Pelagophyceae 72HTRIQ01 Heterocapsa triquetra 72GMIKI01 Gymnodinium mikimotoi species complex 72CRYPT02 Cryptophyta Clade II 72CHLO02 Chlorophyta 72NA1 Alexandrium tamarense (North America) 72Neapel18S A Alexandrium tamarense (Mediterranean) 72AOST18S G+15 Alexandrium ostenfeldii 72AOST28S Dshift3 Alexandrium ostenfeldii 72EUK1209 Eukaryotes 71OLIGR02H OLI51050,26041 70BOLI01 Bolidophyceae 70PRYM01 Prymnesiophyta 69PMINI01 Prorocentrum minimum 69PMINI03 Prorocentrum minimum 69PMINI05 Prorocentrum minimum 69PRORO01 Prorocentrum Clade 69PRORO02 Prorocentrum Clade 69PGLOB01 Phaeocystis globosa 69PGLOB02 Phaeocystis globosa 69PENN01 Pennate diatoms 69MPUSI D Micromonas pusilla 69CRYPT46 Cryptophyta Clades IV & VI 69CRYPT05 Cryptophyta Clade V 69CRYPT04 Cryptophyta Clade IV 69CRYPT01 Cryptophyta Clade I 69BOLI02 Bolidophyceae 69ATWE03 Alexandrium tamarense (Western Europe) 69ATNA02 Alexandrium tamarense (North America) 69Neapel18S B Alexandrium tamarense (Mediterranean) 69Neapel18S F Alexandrium tamarense (Mediterranean) 69AOST18S D Alexandrium ostenfeldii 69ATAM01 Alexandrium 69CPOLY01 Chrysochromulina polylepis 69DINO B Dinophyceae (incl. Apicomplexa) 69PSNPUN A-12 PSEUDONITZSCHIA PUNGENS 68HTRIQ B-3 Heterocapsa triquetra 65
ATWE03 Alexandrium tamarense (Western Europe) 69ATNA02 Alexandrium tamarense (North America) 69Neapel18S B Alexandrium tamarense (Mediterranean) 69Neapel18S F Alexandrium tamarense (Mediterranean) 69AOST18S D Alexandrium ostenfeldii 69ATAM01 Alexandrium 69CPOLY01 Chrysochromulina polylepis 69DINO B Dinophyceae (incl. Apicomplexa) 69PSNPUN A-12 PSEUDONITZSCHIA PUNGENS 68HTRIQ B-3 Heterocapsa triquetra 65OLIGR02F OLI51050,26041 62PLIMA new Prorocentrum lima 60PRYPOARV01 PRYMNESIUM PARVUM 60OLIGR03 OLI51059,33 60PSNMUL A+4 PSEUDONITZSCHIA MULTISERIES 58PSEUDONITSCHIA PSEUDONITZSCHIA 58PRYM03 PRYMNESIOPHYCEAE 58PavloA01 Pavlovaceae 58OLIGR04 OLI51102,16029 58COCCO01 CCOLITHALES 58PSNAUS A-8 PSEUDONITZSCHIA AUSTRALIS 54Hetero01 Heterokonta 54OLIGR01 OLI51080,76,47,6010 53PRYMGL01A PRYMNESIUMPRYMGL02B PRYMNESIUMPMICA01 Prorocentrum micansPMICA03 Prorocentrum micansGMIKI02 Gymnodinium mikimotoi species complexGMIKI03 Gymnodinium mikimotoi species complexCHAE01 ChaetocerosCHAE02 Chaetoceros
EUK 1209
CHLO02
DINO B
PELA01
12.06.00 02.08.01 03.22.01
03.22.0112.06.00
Tetraselmis Alexandrium Eucampia Chrysochomulina
Bolidomonad Achnanthes Alteromonas
DNA
PCR
ControlsPelagomonad
BOLIDO03
PRYM02
Probe Progress
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Navicula diserta ex Willhelmshaven
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clade 02
Pela01 Prym01
Prym02
Clade 1
Penn 01
Ch.poly
Euk 1209
Dino B
NCHLO Chlo01
Chlo02
Pela02
P.salina
Storeatu
Rhinomon
Rhodomar
RhoM1480
Rhodoabb
Psulcata
Crypt.ph
Guillard
CCMP325_Geminige
Tamphiox
Chroosp2
Komma
ChrM1481
ChrM1318
ChrM1312
Hrufesce
Hbrunnes
Hviresce
CryM0739
CRYM117
CRypKo6
CrypM42
ChilomoM
CryM1094
Goniomon
Crypt.sp
G.wittro
C.parado
Cyanopty
G.nostoc
F_distic
Crcd.coh0.01 substitutions/site
Crcd.cohF_distic
CruciplaCalyptro
HelladspCalptr1Calypsph
HOlocospcoccopelCoccpel2Coccpel3
CalcidisUMsibv.fUmbilsibOolifrag
CCMP_300PlpseudoPl.gayra
PleucartPleurelo
Pleur.spPlscherf
PlplacolretjapOchrover
PleuroroHymglobo
HymcoronOchronep
ALgirrobSyrapulc
ChyslameDicrater
Iso.litoISOCHRYS
ReticuloCCMP625
Geph.ocnGephocn1Gephocn2Hux_AtlaehuxDWNEhuxSarE.huxleyehuxTXB
ol26041ol51050
PlatysimPlatsimJ
Prym.nemprymparvPRYMPATEPrymparv
Ch.polylCh.Pc200PrymcalaCh.chito
Ch.minorCh.kappa
Ch.hirtaCh.erici
Ch.herdlChry.herd
ChryhirtCh.fraga
Ch.breviImantoniImanJapCCMP1404
ChCM1204 ChryparkChrybrev
oli33_56ol51059
CH.SPin4CHryspin
OL16029oli51102
ol16108Ch.leadbCh.lead2
ol26017Ch.campuCh.cymbiCh.strob
Ch.simplCh.scuteCHyparJPCh.parva
Ch. acanCh.trondCh.tron2
Ch.rotalCh.spTH2
Ol16010oli26047ol51076
ol51080ol51004
Phgl1524PhxSF162phgb1528phglgmexPhglsurphglEAtlphgl141
PHPOU360phpo145
Phan161Phan157
Phan_144phan143Phan142
PHcordatPH.jaahnPHsp559
BOJO-NZ DiacronePavgyran
Pavlosp.PAVL1416
PavlovasPavl1394
PavsalinExamthem
0.005 substitutions/site
Tetr.theGymbreveGymaureoGymn.mik
GymcfmikGymnmikiGymgalaGyrosp1Gyrosp2Gymngala
PfiesterPfi-likeCrypbrodPfipis1i
PfipisciCachhallH.nieiH.ildefiHeteroca
Penta.tyPARMcl14PARMCL12Scrip.nu GymnpulGymno sp
GymnsangProrPanaThorheimPARMCL09
PeridiniProrEmarProrlimaProrLim2ProrAren
ProrMacuProrConcGloeovisProcmicaProrMexiProcminiProrMin2
ProrolabPARMcl48LEPIDODIGyrod.sp
Gym.cateGymnosp2Gymnosp3Gymnsp5PARMcl31PARMcl20Gymnfusc
DInoacumDinonorvdinoacutDinonor2Phalrotu
PARMcl11 OstreovaFragilidPyrocystPyrocystPyro.bah Alex.tam
Alextama Atam31-4AlexfundAlex.funAtamNa19AtamNa1Aletamar
ActME217AlexcohoAlexostfAlexoste
AlosK324AlosK287AlexminuAlexminuAminal3t
AlexmargALtay2TALtay4tALtay1T Gonyspi2 Gonyspi2Gony.spi
GonyspinCeratocCertenueCerfusc1Cerafus2Gymnbei1Gymnsimp
G.simpleGymnosimPolarellGymnvari
SyCS-161Symbo082SyJCUSG-SymbmicrSymbmeanSymbcorcSymbpiloSymbiodi
SymbspPARMcl57Noct.iluC_cohnii
Crypcoh2AmphcartAmphibelAmylooceAmoebophOLI02001PARMCl37
PerkspPerkmarPeridfolSarocymu
5 changes
ProteromBlastohoBlastosp
Cafe.roeHypochyt CCMP1144CMP1144NT_aquela
BotrydiuVaucheriXanthone
BotridioasterionAsterkarRhapbelgFragcrotFragvireSYneulnaFragisla
fragstriFrag.sppSyedrasp
ThalelegTnitschiAsterforDiatomaRhabdone
Staurcon Pinnular cfCaloneStriasp.
SurirelUndatellPsNpuMGPsNpuMCPsNpuMPPseNmultPsNpuPBPseNpungPsNausMBFragopsi
LyrellaGomparv2 Cymbcymb
EncyonemAnomoeneAchnlancCocconeiAmphopro
CampdiscAmpmont2Amphocap
Amphipro EUnotDGM RossiaNavsubm2Nav.min2
SellapupPhaeotriEunotiaBacpaxil
Achnasp1AchnabonPseudoGoPseuGomp
NaviculaPFOLSYMBPBALSYMBPleurospNitzCFfrN.apicul
CylclostCyclopho MicrotabGramtocnLamprisc
BID.P782CymatbelPapelegaeucampia Phaeoscechaetros
ChaetdidChaetospPleulaevOdontsinBelleroc
LithodesStreptamDitylbriSkel1009SkelsubsskelcoskSkelcosPSkelcosASkpseMED
SkelmenzSKelmen2ThalpseuThalspThalprof
ThaleccnThalrotuPlanksolCyclmenecyc menDetoncon
Thalfluv PoroglacLauderiaLeptodanLeptomin
StephbroAulacdisAulacambAulanyanAulasuba
AulislanAULASKV2AulabAB8AulabAB2MelovarsMelvar3
Probosci CoscradiActinoptActinoc2Actinocy
RhizosetRHizose1GuinflacRHSETGR2RhimbricGuindeli
COHISTRICorecriocoreinerFlag46SEFlag94SCFlag31SEPARALIADICTYOCH
RHIZOCHRPSEUDOPEAPEDINEPelasubvPelagosuCCMP1395PelagomdCCMP1145
Aureocanpar.cl7par.cl35Pela1410AureLaguPulvinar
SarcinomN.salinaNannsal2Nannosp1NanngranNannosp2Nannocul
MonodopsVischeriEustigmaPseuchar
Flag11SAFlag77SCO_danicaM.striatM_papill
S.espinoC_chromoChrysosp
GirausteF_disticSaccopolChordatoDesmarli
SporocomAlarmargMacrocys
ScytolomEctosiliHeterosi
ChattoneVacuolarL_gigantP_megaspA_bisexu
Developa TKRREUPRRE
Lbyr.minCFRRN16LAF008242AF008241
10 changes
Bolidomonads
Pelagophytes
Eustigmatophytes
Silicoflagellates
Diatoms
Array of four A. tamarense and one A. lusitanicum strain from different geographic regions hybridised with species- and strain-specific FITC-labelled
probes.
In situ Hybridisation
DINO01
AOST02AOST01
In situ Hybridisation of Alexandrium Species with Specific rRNA Probes
<15
<10
>70
>50
>40
<5
Dino01
Aost01
Atam01
Atna01
Station
9
Station
14
ProbesA. tamarense siteA. ostenfeldii site
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